STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afuAPeriplasmic ferric iron-binding protein AfuA. (344 aa)    
Predicted Functional Partners:
afuB
Permease component of transport system for ferric iron, AfuB protein.
 
 
 0.993
afuC
ABC transporter ATP-binding protein AfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.976
uhpC
Regulatory protein UhpC.
 
  
 0.894
thiP
Thiamine transport system permease protein.
 
  
 0.779
uhpB
Two-component sensor histidine kinase UhpB, phosphorylates UhpA.
 
   
 0.645
uhpA
Two-component response regulator. Hexose phosphate transport system regulatory protein UhpA.
     
 0.570
plu2853
Fe/B12 periplasmic-binding domain-containing protein; Unnamed protein product; Some similarities with iron(III) ABC transporter, periplasmic iron-binding protein.
 
  
 0.482
plu3738
Fe/B12 periplasmic-binding domain-containing protein; Unnamed protein product; Some similarities with putative iron(III) ABC transporter, periplasmic iron-binding protein.
 
  
 0.481
glpT
Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease).
  
  
 0.470
hpaX
4-hydroxyphenylacetate permease.
  
  
 0.460
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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