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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uhpBTwo-component sensor histidine kinase UhpB, phosphorylates UhpA. (514 aa)    
Predicted Functional Partners:
uhpA
Two-component response regulator. Hexose phosphate transport system regulatory protein UhpA.
 
 
  0.994
narP
Nitrate/nitrite response regulator protein NarP.
 
 
   0.771
bvgR
Two-component response regulator BvgR protein.
 
 
   0.748
rcsB
Capsular synthesis regulator component B; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
   0.725
uvrY
Transcription regulator.
 
 
   0.716
uhpC
Regulatory protein UhpC.
 
  
 0.646
afuA
Periplasmic ferric iron-binding protein AfuA.
 
   
 0.645
afuB
Permease component of transport system for ferric iron, AfuB protein.
 
     0.564
afuC
ABC transporter ATP-binding protein AfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
     0.501
plu0360
ImpA_N domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.470
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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