Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0818Unnamed protein product; Some similarities with gp31 protein of Bacteriophage. (381 aa)    
Predicted Functional Partners:
plu0817
Unnamed protein product; Weakly similar to unknown protein.
       0.773
plu0820
VRR-NUC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with gp30 protein of Bacteriophage.
       0.677
plu0819
Unnamed protein product; Some similarities with gp31 protein of Bacteriophage.
      
0.675
plu0826
Unnamed protein product; Some similarities with VgrG and VgrE proteins.
     
 0.633
plu3237
Unnamed protein product; Similar to vgrG related protein.
     
 0.544
plu3253
Unnamed protein product; Similar to vgrG related protein.
     
 0.544
plu3238
Unnamed protein product; Similar to putative membrane protein of Y. pestis.
      
 0.531
plu3248
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens.
      
 0.531
mrfJ
MrfJ protein; Highly similar to fimbrial protein MrpJ of Proteus mirabilis.
      
 0.428
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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