Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0840Unnamed protein product; Similar to enterotoxin encoded by the ast gene of Aeromonas hydrophila. (639 aa)    
Predicted Functional Partners:
plu3428
Unnamed protein product; Similar to unknown protein.
  
     0.692
plu3437
Unnamed protein product; Similar to unknown protein.
  
     0.689
plu0841
Isochorismatase domain-containing protein; Unnamed protein product; Similar to amidase.
       0.686
plu3448
Unnamed protein product; Similar to unknown protein.
  
     0.686
plu0838
PTS EIIA type-4 domain-containing protein; Unnamed protein product; Similar to putative PTS system IIA component YadI of Escherichia coli.
       0.680
gatY
Tagatose-bisphosphate aldolase GatY.
       0.676
plu3483
Unnamed protein product; Similar to bacteriophage protein.
  
     0.623
plu3445
Unnamed protein product; Similar to putative membrane protein.
  
     0.619
plu3461
Mor domain-containing protein; Unnamed protein product; Similar to DNA-binding protein RdgB which regulates pectin lyase in response to DNA damage.
  
     0.607
plu3423
Unnamed protein product; Highly similar to tail fiber protein.
  
     0.604
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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