Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0852Unnamed protein product; Highly similar to toxin secretion ABC transporter ATP-binding protein. (697 aa)    
Predicted Functional Partners:
rtxD
RTX toxin ABC transporter protein (MFP) RtxD.
 
 
 0.795
plu0635
Unnamed protein product; Similar to hemolysin export system membrane fusion protein HlyD of Escherichia coli (hemolysin secretion protein D).
 
 
 0.794
plu3126
Unnamed protein product; Similar to toxin secretion transporter (Membrane Fusion Protein (MFP)).
 
 
 0.793
plu0643
P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.
 
    0.618
plu3668
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin.
 
  
 0.618
plu4117
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin and hemolysin-type calcium binding protein.
 
  
 0.597
prtC
Membrane Fusion Protein PrtC.
 
 
 0.513
plu0851
Uncharacterized protein; Truncated gene. Weakly similar to putative integrase.
       0.458
plu2313
Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.
 
  
 0.454
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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