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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cpmISimilar to CarF, protein involved in resistance to carbapenem. (277 aa)    
Predicted Functional Partners:
flgJ
Peptidoglycan hydrolase FlgJ (Muramidase flgJ).
  
  
 0.988
flgB
Flagellar basal-body rod protein FlgB (Putative proximal rod protein); Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
  
 
 0.908
flgG
Flagellar basal-body rod protein FlgG (Distal rod protein); Belongs to the flagella basal body rod proteins family.
  
 
 0.854
fliE
Flagellar hook-basal body 11K protein FliE.
  
 
 0.852
flgC
Flagellar basal-body rod protein FlgC (Putative proximal rod protein); Belongs to the flagella basal body rod proteins family.
  
 
 0.840
flgH
Flagellar L-ring protein precursor (Basal body L-ring protein); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
 
 0.835
flgI
Flagellar P-ring protein precursor (Basal body P-ring protein); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
 
 0.835
flgF
Flagellar basal-body rod protein FlgF (Putative proximal rod protein).
  
 
 0.834
motB
Chemotaxis protein.
  
  
 0.828
flgE
Flagellar hook protein FlgE.
  
 
 0.828
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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