Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0949HTH tetR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator. (197 aa)    
Predicted Functional Partners:
plu3044
CMD domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
     0.671
plu0948
HTH marR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator.
 
   
 0.610
plu2425
HTH tetR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator.
  
  
 0.566
plu0950
FAD-binding PCMH-type domain-containing protein; Unnamed protein product; Some similarities with eugenol hydroxylase flavoprotein subunit.
       0.501
plu2643
Unnamed protein product; Similar to probable MFS transporter.
 
     0.458
plu0951
Formyl_trans_C domain-containing protein; Unnamed protein product; Hypothetical protein.
       0.430
plu1526
Oxidored_FMN domain-containing protein; Unnamed protein product; Similar to oxidoreductase (N-ethylmaleimide reductase, nemA gene product of Escherichia coli and morphinone reductase).
  
  
 0.430
plu1975
Oxidored_FMN domain-containing protein; Unnamed protein product; Similar to xenobiotic reductase B and NAD(P)H-dependent 2-cyclohexen-1-one reductase homolog.
  
  
 0.430
plu0952
Cupin_2 domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
       0.427
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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