STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0952Cupin_2 domain-containing protein; Unnamed protein product; Some similarities with unknown protein. (120 aa)    
Predicted Functional Partners:
plu0951
Formyl_trans_C domain-containing protein; Unnamed protein product; Hypothetical protein.
       0.768
plu0950
FAD-binding PCMH-type domain-containing protein; Unnamed protein product; Some similarities with eugenol hydroxylase flavoprotein subunit.
       0.648
plu1439
Unnamed protein product; Similar to unknown protein.
 
    0.577
plu2093
Unnamed protein product; Similar to unknown protein.
  
    0.504
plu4192
Unnamed protein product; Similar to polyketide cyclase.
  
    0.504
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
       0.454
plu0949
HTH tetR-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator.
       0.427
plu4876
Reverse transcriptase domain-containing protein; Unnamed protein product; Similar to RNA-directed DNA polymerase.
  
     0.403
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.