Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tcdB1Highly similar to insecticidal toxin complex protein TcdB. (1476 aa)    
Predicted Functional Partners:
tccC2
Insecticidal toxin complex protein TccC2.
 
 
 
 0.994
tcdA1
Highly similar to insecticidal toxin complex protein TcdA (toxin A).
 
 
 0.971
tccC5
Insecticidal toxin complex protein TccC5.
 
 
 
 0.963
tccC3
Insecticidal toxin complex protein TccC3.
 
 
 
 0.944
tccB3
Insecticidal toxin complex protein TccB3.
 
 
 0.907
tcdA4
Insecticidal toxin complex protein TcdA4.
 
 
 0.907
tcdA2
Insecticidal toxin complex protein TcdA2.
 
 
 0.907
tcdA5
Insecticidal toxin complex protein TcdA5.
 
 
 0.907
tccC7
Insecticidal toxin complex protein TccC7.
 
 
   0.907
tccB1
Highly similar to insecticidal toxin complex protein TccB of W14 Putative transmembrane protein.
 
 
 0.905
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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