STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpaC4-hydroxyphenylacetic acid hydroxylase. (172 aa)    
Predicted Functional Partners:
hpaB
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase).
 
  
 0.927
fre
NAD(P)H-flavin reductase (NAD(P)H:flavin oxidoreductase).
  
 
  0.918
ribF
Riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.
    
 0.912
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
 
  0.905
ribE
Riboflavin synthase alpha chain.
    
  0.902
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (polyprenyl p-hydroxybenzoate decarboxylase); Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
  0.902
plu3812
Unnamed protein product; Weakly similar to riboflavin synthase, alpha chain RibE.
    
  0.902
feaB
Phenylacetaldehyde dehydrogenase (PAD).
     
 0.900
plu4637
Unnamed protein product; Similar to unknown protein YigB of Escherichia coli.
     
  0.900
plu4258
Unnamed protein product; Similar to 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component HpaB.
 
  
 0.796
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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