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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpaC4-hydroxyphenylacetic acid hydroxylase. (172 aa)    
Predicted Functional Partners:
fre
NAD(P)H-flavin reductase (NAD(P)H:flavin oxidoreductase).
  
 
  0.917
hpaB
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component (4-HPA 3-monooxygenase large component) (4-HPA 3-hydroxylase).
 
  
 0.914
ribF
Riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.
    
  0.907
hpcB
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
  
 
 0.904
ribE
Riboflavin synthase alpha chain.
    
  0.902
plu3812
Unnamed protein product; Weakly similar to riboflavin synthase, alpha chain RibE.
    
  0.902
plu4637
Unnamed protein product; Similar to unknown protein YigB of Escherichia coli.
     
 0.901
plu4258
Unnamed protein product; Similar to 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component HpaB.
 
  
 0.796
plu3815
Bac_luciferase domain-containing protein; Unnamed protein product; Similar to putative monooxygenase YcdM of Escherichia coli.
 
  
 0.653
plu4027
Unnamed protein product; Similar to 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component HpaB.
 
  
 0.636
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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