STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1000Rieske domain-containing protein; Unnamed protein product; Similar to salicylate-5-hydroxylase large oxygenase component. (402 aa)    
Predicted Functional Partners:
plu1001
Unnamed protein product; Some similarities with salicylate-5-hydroxylase small oxygenase component.
 
 0.998
hcaF
3-phenylpropionate dioxygenase beta subunit (digoxigenin beta subunit); Part of the multicomponent 3-phenylpropionate dioxygenase. Converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3- phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively.
 
 
 0.941
plu0999
Cupin_2 domain-containing protein; Unnamed protein product; Some weak similarities with unknown protein.
     
 0.776
hcaD
3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component; Part of the multicomponent 3-phenylpropionate dioxygenase, that converts 3-phenylpropionic acid (PP) and cinnamic acid (CI) into 3-phenylpropionate-dihydrodiol (PP-dihydrodiol) and cinnamic acid- dihydrodiol (CI-dihydrodiol), respectively.
  
 0.768
mhpB
2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase; Catalyzes the non-heme iron(II)-dependent oxidative cleavage of 2,3-dihydroxyphenylpropionic acid and 2,3-dihydroxicinnamic acid into 2-hydroxy-6-ketononadienedioate and 2-hydroxy-6- ketononatrienedioate, respectively; Belongs to the LigB/MhpB extradiol dioxygenase family.
 
     0.664
tRNA-Pro
tRNA-Pro; tRNAscan-SE vs 1.3 result - Cove score = 92.73; Belongs to the cytochrome P450 family.
 
   
 0.633
plu2201
FAA_hydrolase domain-containing protein; Unnamed protein product; Similar to 2-oxopent-4-dienoate hydratase.
 
   
 0.626
plu1219
Unnamed protein product; Similar to Sim-nI, NovI and KikQ (cytochromes P-450), proteins involved in antibiotic biosynthesis.
 
   
 0.596
plu2262
Unnamed protein product; Some similarities with molybdopterin oxidoreductase and dimethylsulfoxide reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.563
plu1004
TauD domain-containing protein; Unnamed protein product; Similar to alpha-ketoglutarate-dependent taurine dioxygenase (2-aminoethanesulfonate dioxygenase).
 
     0.556
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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