STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1003MFS domain-containing protein; Unnamed protein product; Weakly similar to cyanate transport protein. (403 aa)    
Predicted Functional Partners:
plu1004
TauD domain-containing protein; Unnamed protein product; Similar to alpha-ketoglutarate-dependent taurine dioxygenase (2-aminoethanesulfonate dioxygenase).
       0.714
plu0566
UPF0246 protein plu0566; Unnamed protein product; Highly similar to unknown protein YaaA of Escherichia coli; Belongs to the UPF0246 family.
  
    0.677
plu1005
MFS domain-containing protein; Unnamed protein product; Similar to 4-hydroxybenzoate transporter PcaK.
       0.559
plu1002
Unnamed protein product; Similar to hypothetical proteins, bile acid-inducible operon protein F, racemase and putative dehydratase; Belongs to the CoA-transferase III family.
       0.513
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.