Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilQSimilar to PilQ protein. (517 aa)    
Predicted Functional Partners:
hofC
Protein transport protein HofC.
 
 
 0.924
plu1733
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.837
pilN
Highly similar to PilN protein.
 
  
 0.816
plu1742
Unnamed protein product; Similar to bundle forming pilus BfpE, PilR and toxin co-regulated pilus biosynthesis protein E.
 
 
 0.816
plu0091
Secretin_N domain-containing protein; Unnamed protein product; Some similarities with protein transport protein HofQ precursor of Escherichia coli.
 
 
 
 0.792
pilO
Similar to PilO.
       0.748
pilP
PilP protein; Some similarities with PilP protein.
       0.741
pilL
PilL protein; Some similarities with PilL protein.
     
 0.727
pilM
Similar to PilM protein.
       0.720
pilR
Highly similar to PilR protein.
 
 
 0.704
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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