Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilRHighly similar to PilR protein. (361 aa)    
Predicted Functional Partners:
pilV
PilV protein; Similar to type IV prepilin PilV protein.
 
  
 0.878
pilN
Highly similar to PilN protein.
 
  
 0.817
plu1738
Secretin_N_2 domain-containing protein; Unnamed protein product; Similar to PilN, BfpB and lipoprotein.
 
  
 0.813
pilQ
Similar to PilQ protein.
 
 
 0.704
plu1741
T2SP_E domain-containing protein; Unnamed protein product; Some similarities with PilQ and BfpD.
 
 
 0.673
hofB
Protein transport protein HofB.
  
 
 0.625
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
   
  
 0.590
pilL
PilL protein; Some similarities with PilL protein.
 
   
 0.571
plu3933
Unnamed protein product; Similar to unknown protein.
  
     0.563
ppdA
Prepilin peptidase dependent protein A precursor.
  
  
 0.544
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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