STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilRHighly similar to PilR protein. (361 aa)    
Predicted Functional Partners:
pilV
PilV protein; Similar to type IV prepilin PilV protein.
 
  
 0.880
pilN
Highly similar to PilN protein.
 
  
 0.810
plu1738
Secretin_N_2 domain-containing protein; Unnamed protein product; Similar to PilN, BfpB and lipoprotein.
 
  
 0.806
pilQ
Similar to PilQ protein.
 
 
 0.719
plu1741
T2SP_E domain-containing protein; Unnamed protein product; Some similarities with PilQ and BfpD.
 
 
 0.690
hofB
Protein transport protein HofB.
  
 
 0.644
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
   
  
 0.634
plu3933
Unnamed protein product; Similar to unknown protein.
  
     0.563
ppdA
Prepilin peptidase dependent protein A precursor.
  
  
 0.557
plu1734
Shufflon_N domain-containing protein; Unnamed protein product; Some similarities with PilV.
  
  
 0.557
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.