Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilUPilU protein; Similar to prepilin peptidase PilU protein. (221 aa)    
Predicted Functional Partners:
plu1186
Peptidase_A24 domain-containing protein; Unnamed protein product; Similar to type IV prepilin peptidase; Belongs to the peptidase A24 family.
     
  0.900
pilS
PilS protein; Highly similar to type IV prepilin PilS protein.
     
 0.822
pilV
PilV protein; Similar to type IV prepilin PilV protein.
  
  
 0.768
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
  
  
 0.626
plu3864
Unnamed protein product; Similar to unknown protein YbaV of Escherichia coli.
   
  
 0.506
plu4453
Unnamed protein product; Similar to a putative DNA processing protein.
  
  
 0.487
smf
Smf protein.
  
  
 0.487
plu1834
Unnamed protein product; Some weak similarities with unknown protein.
   
    0.427
pilR
Highly similar to PilR protein.
  
  
 0.416
plu1742
Unnamed protein product; Similar to bundle forming pilus BfpE, PilR and toxin co-regulated pilus biosynthesis protein E.
  
  
 0.416
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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