STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilVPilV protein; Similar to type IV prepilin PilV protein. (392 aa)    
Predicted Functional Partners:
plu1742
Unnamed protein product; Similar to bundle forming pilus BfpE, PilR and toxin co-regulated pilus biosynthesis protein E.
 
  
 0.883
pilR
Highly similar to PilR protein.
 
  
 0.880
plu1738
Secretin_N_2 domain-containing protein; Unnamed protein product; Similar to PilN, BfpB and lipoprotein.
 
  
 0.773
pilN
Highly similar to PilN protein.
 
  
 0.743
pilU
PilU protein; Similar to prepilin peptidase PilU protein.
  
  
 0.736
plu4210
Uncharacterized protein; Truncated gene. Similar to the N terminal part of unknown proteins of Photorhabdus luminescens.
  
     0.731
plu4220
Unnamed protein product; Highly similar to unknown protein of Photorhabdus luminescens.
  
     0.730
ppdB
Prepilin peptidase dependent protein B precursor.
  
 
 0.699
plu3252
Unnamed protein product; Similar to unknown protein.
  
     0.691
plu3236
Unnamed protein product; Similar to unknown protein.
  
     0.687
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.