STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1106FMN hydroxy acid dehydrogenase domain-containing protein; Unnamed protein product; Similar to L-mandelate and L-lactate dehydrogenase. (382 aa)    
Predicted Functional Partners:
plu2626
FAD-binding PCMH-type domain-containing protein; Unnamed protein product; Similar to putative oxidase YdiJ of Escherichia coli.
  
 0.802
plu1105
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to aminotransferase.
 
  
 0.561
plu1104
VOC domain-containing protein; Unnamed protein product; Similar to lactoylglutathione lyase and related lyases.
  
  
 0.525
dld
D-lactate dehydrogenase; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family.
 
 0.507
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
   
 0.496
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
  
 0.473
plu2266
Abhydrolase_3 domain-containing protein; Unnamed protein product; Similar to lipase.
 
    0.463
plu3364
FAD-binding PCMH-type domain-containing protein; Unnamed protein product; Some similarities with the N-terminal region of different oxydases.
 
 0.457
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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