plu1163 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plu1163

N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein. (240 aa)

Predicted Functional Partners:

hsdS

0.864

hsdR

0.628

plu1164

0.529

plu1162

0.491

plu1165

0.491

plu0137

0.483

pilN

0.457

plu1932

0.443

plu1931

0.431

plu1166

0.411

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
hsdR	hsdS	plu4322	plu4320	Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction enzyme specificity protein HsdS.	0.958
hsdR	plu0137	plu4322	plu0137	Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Unnamed protein product; Highly similar to unknown protein.	0.816
hsdR	plu1163	plu4322	plu1163	Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	0.628
hsdS	hsdR	plu4320	plu4322	Type I restriction enzyme specificity protein HsdS.	Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.958
hsdS	plu0137	plu4320	plu0137	Type I restriction enzyme specificity protein HsdS.	Unnamed protein product; Highly similar to unknown protein.	0.773
hsdS	plu1163	plu4320	plu1163	Type I restriction enzyme specificity protein HsdS.	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	0.864
pilN	plu1163	plu1051	plu1163	Highly similar to PilN protein.	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	0.457
plu0137	hsdR	plu0137	plu4322	Unnamed protein product; Highly similar to unknown protein.	Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.816
plu0137	hsdS	plu0137	plu4320	Unnamed protein product; Highly similar to unknown protein.	Type I restriction enzyme specificity protein HsdS.	0.773
plu0137	plu1163	plu0137	plu1163	Unnamed protein product; Highly similar to unknown protein.	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	0.483
plu1162	plu1163	plu1162	plu1163	DUF1281_C domain-containing protein; Unnamed protein product; Similar to unknown protein.	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	0.491
plu1163	hsdR	plu1163	plu4322	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.628
plu1163	hsdS	plu1163	plu4320	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Type I restriction enzyme specificity protein HsdS.	0.864
plu1163	pilN	plu1163	plu1051	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Highly similar to PilN protein.	0.457
plu1163	plu0137	plu1163	plu0137	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Unnamed protein product; Highly similar to unknown protein.	0.483
plu1163	plu1162	plu1163	plu1162	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	DUF1281_C domain-containing protein; Unnamed protein product; Similar to unknown protein.	0.491
plu1163	plu1164	plu1163	plu1164	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Unnamed protein product; Hypothetical gene.	0.529
plu1163	plu1165	plu1163	plu1165	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Unnamed protein product; Similar to unknown protein STY4665 of Salmonella enterica subsp. enterica serovar Typhi.	0.491
plu1163	plu1166	plu1163	plu1166	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	Unnamed protein product; Similar to XerC integrase; Belongs to the 'phage' integrase family.	0.411
plu1163	plu1931	plu1163	plu1931	N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.	HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein.	0.431

page 1 of 2

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About