Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu1186Peptidase_A24 domain-containing protein; Unnamed protein product; Similar to type IV prepilin peptidase; Belongs to the peptidase A24 family. (203 aa)    
Predicted Functional Partners:
pilU
PilU protein; Similar to prepilin peptidase PilU protein.
     
  0.900
hofC
Protein transport protein HofC.
 
  
 0.823
hofB
Protein transport protein HofB.
 
 
 0.694
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
 
  
 0.683
plu1741
T2SP_E domain-containing protein; Unnamed protein product; Some similarities with PilQ and BfpD.
 
 
 0.670
plu1181
T2SP_E domain-containing protein; Unnamed protein product; Similar to putative protein transporter YggR of Escherichia coli.
 
   
 0.641
pilQ
Similar to PilQ protein.
 
 
 0.639
plu0091
Secretin_N domain-containing protein; Unnamed protein product; Some similarities with protein transport protein HofQ precursor of Escherichia coli.
 
  
 0.620
plu3864
Unnamed protein product; Similar to unknown protein YbaV of Escherichia coli.
   
  
 0.506
plu1185
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
 
     0.497
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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