Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1210TauD domain-containing protein; Unnamed protein product; Similar to SyrP-like protein. (323 aa)    
Predicted Functional Partners:
plu0897
Carrier domain-containing protein; Unnamed protein product; Similar to peptide synthetases, pyoverdine synthetase and antibiotics synthetases; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.907
plu1878
Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase.
  
 0.860
plu3533
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotics biosynthesis (NosC, gramidin S synthetase II, tyrocidine synthetase III...); Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.860
plu0898
Carrier domain-containing protein; Unnamed protein product; Some similarities with peptide synthetase like pristinamycin I synthase 3, actinomycin synthetase III and virginiamycin S synthetase. Putative transmembrane protein.
  
 0.796
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
  
 0.785
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
  
 0.772
plu1216
MbtH domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
     0.766
plu0899
Carrier domain-containing protein; Unnamed protein product; Some similarities with peptide synthetase like pristinamycin I synthase 3, actinomycin synthetase III and virginiamycin S synthetase. Putative transmembrane protein.
  
 0.746
plu1217
PKS_TE domain-containing protein; Unnamed protein product; Some similarities with thioesterase II, pyochelin biosynthetic protein PchC and gramicidin S biosynthesis protein GrsT.
 
  
 0.733
plu3530
Unnamed protein product; Similar to ATP-binding component (IM-ABC) of ABC transport system.
 
   
 0.729
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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