Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hemRHemin receptor precursor protein HemR. (766 aa)    
Predicted Functional Partners:
plu2717
TonB_C domain-containing protein; Unnamed protein product; Similar to unknown protein CjrB of Escherichia coli O164 and some similarities with inner-membrane protein TonB.
 
 
 0.688
plu3814
MFS domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.606
plu0228
PMT_2 domain-containing protein; Truncated gene. Some similarities with binding protein component of ABC transporter.
  
     0.595
plu2634
Fe/B12 periplasmic-binding domain-containing protein; Unnamed protein product; Highly similar to hemin-binding protein.
 
  
 0.581
plu3512
TonB_C domain-containing protein; Unnamed protein product; Some similarities with energy transducer TonB. Putative secreted protein.
 
 
 0.580
plu0817
Unnamed protein product; Weakly similar to unknown protein.
  
     0.549
plu2230
Metallophos domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.541
hmuV
Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
  
 0.501
plu4899
Sulfatase domain-containing protein; Unnamed protein product; Similar to putative membrane protein.
  
     0.493
plu3926
Unnamed protein product; Some similarities with ribonuclease; Belongs to the RNase T2 family.
  
     0.479
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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