Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu1242UPF0255 protein plu1242; Unnamed protein product; Similar to unknown protein YafA of Escherichia coli; Belongs to the UPF0255 family. (415 aa)    
Predicted Functional Partners:
plu4737
Unnamed protein product; Similar to unknown protein YijD of Escherichia coli.
  
     0.772
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
  
     0.761
gpt
Xanthine-guanine phosphoribosyltransferase (XGPRT); Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
       0.747
plu4557
Unnamed protein product; Highly similar to unknown protein YtfK of Escherichia coli.
  
     0.727
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.725
plu0699
UPF0294 protein plu0699; Unnamed protein product; Similar to unknown protein YafD of Escherichia coli.
  
     0.717
zapC
Cell division protein ZapC; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.677
plu2088
Unnamed protein product; Similar to putative lipoprotein YceB of Escherichia coli.
  
     0.663
asmA
Protein AsmA precursor.
  
    0.648
plu4106
Unnamed protein product; Similar to unknown protein YhhL of Escherichia coli.
  
     0.631
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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