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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1272Unnamed protein product; Highly similar to putative acetyl-CoA synthetase YfiQ of Escherichia coli. (880 aa)    
Predicted Functional Partners:
plu1273
Unnamed protein product; Hypothetical gene.
       0.773
glpR
Glycerol-3-phosphate regulon repressor.
  
 
   0.595
plu1274
SpoU_sub_bind domain-containing protein; Unnamed protein product; Highly similar to putative tRNA/rRNA methyltransferase YfiF Escherichia coli; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.553
agaR
Putative aga operon transcriptional repressor.
    
   0.544
plu2511
HTH deoR-type domain-containing protein; Unnamed protein product; Highly similar to hypothetical transcriptional regulator YgbI of Escherichia coli.
    
   0.544
fucR
L-fucose operon activator.
    
   0.544
bvgS
Virulence sensor protein BvgS precursor.
  
 
 0.504
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase (phosphatidylserine synthase).
       0.496
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
  
 0.482
prpE
Propionate--CoA ligase (Propionyl-CoA synthetase).
 
   
 0.481
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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