Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
emrBMultidrug resistance protein B; Belongs to the major facilitator superfamily. (513 aa)    
Predicted Functional Partners:
emrA
Multidrug resistant protein A.
 
 
 0.981
plu4679
Biotin_lipoyl_2 domain-containing protein; Unnamed protein product; Similar to multidrug resistance protein A.
 
 
 0.909
plu0927
Unnamed protein product; Similar to MFS transporter.
  
     0.744
mprA
Transcriptional repressor mprA (EmrR protein).
 
   
 0.636
plu1505
MFS domain-containing protein; Unnamed protein product; Some similarities with bicyclomycin resistance protein and multidrug resistance protein D.
  
   
 0.517
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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