Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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furFerric uptake transcription regulator (ferric uptake regulator); Belongs to the Fur family. (148 aa)    
Predicted Functional Partners:
fldA
Flavodoxin 1; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
  
  
 0.728
ahpC
Alkyl hydroperoxide reductase, small subunit (antioxidant).
  
  
 0.680
zur
Zinc uptake regulation protein (Zinc uptake regulator); Belongs to the Fur family.
 
   
 0.555
trxA
Thioredoxin 1 (TRX1) (TRX); Belongs to the thioredoxin family.
  
 
 0.548
tpx
Thiol peroxidase (scavengase p20); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
   
  
 0.536
plu1781
CoA_binding domain-containing protein; Unnamed protein product; Highly similar to unknown protein YccU of Escherichia coli.
  
    0.526
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.522
copA
Copper-transporting P-type ATPase.
     
 0.503
hemH
Ferrochelatase (protoheme ferro-lyase) (heme synthetase); Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
      
 0.492
nadR
Transcriptional regulator NadR.
  
    0.486
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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