Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
plu1330HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC-family transcriptional regulator. (268 aa)    
Predicted Functional Partners:
plu3775
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to the transcriptional activator protein ExsA/VirF.
  
   0.686
plu1810
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator.
 
 
 0.680
plu2638
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator (AraC/XylS family).
  
   0.673
plu2787
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC-family transcriptional regulatory protein.
  
   0.650
plu0634
Unnamed protein product; Similar to toxin secretion ATP-binding protein.
      
 0.531
plu3217
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
      
 0.531
plu3324
Peptidase C80 domain-containing protein; Unnamed protein product; Similar to RTX toxin RtxA.
      
 0.531
plu4117
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin and hemolysin-type calcium binding protein.
      
 0.531
plu1329
RHH_1 domain-containing protein; Unnamed protein product; Highly similar to unknown protein YbfE of Escherichia coli.
       0.486
rob
Right origin-binding protein.
 
   0.476
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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