STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtxDRTX toxin ABC transporter protein (MFP) RtxD. (451 aa)    
Predicted Functional Partners:
rtxB
RTX toxin ABC transporter (IM-ABC) protein RtxB.
 
 0.983
plu1331
Unnamed protein product; Similar to unknown protein VC1446 of Vibrio cholerae, probable RTX toxin ABC transporter (IM-ABC) protein.
 
 0.967
plu3126
Unnamed protein product; Similar to toxin secretion transporter (Membrane Fusion Protein (MFP)).
  
  
 
0.905
plu3127
Unnamed protein product; Similar to toxin secretion transporter.
 
 0.860
plu0634
Unnamed protein product; Similar to toxin secretion ATP-binding protein.
 
 0.858
plu3125
Unnamed protein product; Similar to toxin secretion transporter.
 
 0.858
plu0852
Unnamed protein product; Highly similar to toxin secretion ABC transporter ATP-binding protein.
 
 
 0.797
rtxC
Cytolysin-activating lysine-acyltransferase RtxC.
 
   
 0.763
plu3668
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin.
 
  
 0.748
plu4117
Unnamed protein product; Similar to unknown protein of Photorhabdus and some similarities with Fe-regulated RTX cytotoxin and hemolysin-type calcium binding protein.
 
  
 0.744
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.