Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu1370Alpha-2-macroglobulin; Protects the bacterial cell from host peptidases. (1676 aa)    
Predicted Functional Partners:
pbpC
Penicillin-binding protein 1C (PBP-1C).
 
   
 0.953
plu4776
PlsC domain-containing protein; Unnamed protein product; Some similarities with 2-acylglycerophosphoethanolamine acyltransferase and 1-acylglycerol-3-phosphate O-acyltransferase.
  
    0.528
nrdR
Transcriptional repressor NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
    
   0.448
plu1882
Sugarporin_N domain-containing protein; Unnamed protein product; Similar to putative glycoporin. Putative secreted protein.
  
     0.419
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.417
plu2942
Unnamed protein product; Similar to DNA-methyltransferase; Belongs to the MT-A70-like family.
  
 
   0.400
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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