Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu1385BOF domain-containing protein; Unnamed protein product; Similar to putative exported protein YgiW of Escherichia coli. (139 aa)    
Predicted Functional Partners:
plu1386
Unnamed protein product; Similar to putative lipoprotein precursor YfeY protein of Escherichia coli.
 
     0.625
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.563
plu1559
Unnamed protein product; Similar to putative transport protein YegH Escherichia coli.
  
  
 0.561
plu3066
Unnamed protein product; Highly similar to tyrosine-specific transport system TyrP of Escherichia coli.
  
     0.553
plu2340
Unnamed protein product; Highly similar to tyrosine-specific transport system TyrP of Escherichia coli.
  
     0.552
plu2860
Unnamed protein product; Highly similar to the tryptophan-specific transport protein.
  
     0.538
mtr
Tryptophan-specific transport protein (Tryptophan permease).
  
     0.529
plu0425
Unnamed protein product; Highly similar to unknown protein YheO of Escherichia coli.
  
     0.459
macB
Macrolide-specific ABC-type efflux carrier protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
     0.456
plu4247
PNPLA domain-containing protein; Truncated transposase.
  
     0.445
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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