STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1424Unnamed protein product; Highly similar to unknown protein YbgI of Escherichia coli. (247 aa)    
Predicted Functional Partners:
plu4305
Unnamed protein product; Similar to unknown protein.
  
  
 0.638
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
       0.634
nlpI
Lipoprotein NlpI precursor; May be involved in cell division.
   
    0.569
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.489
plu1105
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to aminotransferase.
   
    0.418
plu2044
HTH gntR-type domain-containing protein; Unnamed protein product; Similar to unknown protein YdcR of Escherichia coli.
   
    0.418
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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