Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1424Unnamed protein product; Highly similar to unknown protein YbgI of Escherichia coli. (247 aa)    
Predicted Functional Partners:
nlpI
Lipoprotein NlpI precursor; May be involved in cell division.
   
    0.676
plu1423
Unnamed protein product; Similar to unknown protein YbfA of Escherichia coli.
       0.672
plu4305
Unnamed protein product; Similar to unknown protein.
  
  
 0.592
rffG
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.514
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
  
 0.483
plu1105
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to aminotransferase.
   
    0.446
plu2044
HTH gntR-type domain-containing protein; Unnamed protein product; Similar to unknown protein YdcR of Escherichia coli.
   
    0.446
plu4033
Unnamed protein product; Highly similar to ABC transporter, permease protein YrbE of Escherichia coli.
 
     0.410
plu4034
Unnamed protein product; Highly similar to ABC transporter, ATP-binding protein YrbF of Escherichia coli.
 
     0.409
pepD
Aminoacyl-histidine dipeptidase (XAA-His dipeptidase) (beta-alanyl-histidine dipeptidase) (carnosinase) (peptidase D).
  
    0.407
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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