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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1434Unnamed protein product; Some similarities with putative oxidoreductase. (233 aa)    
Predicted Functional Partners:
plu4269
Unnamed protein product; Similar to amino acid decarboxylase.
  
  
  0.918
tnaA
Tryptophanase (L-tryptophan indole-lyase) (TNase); Belongs to the beta-eliminating lyase family.
     
  0.900
plu1435
Aminotran_5 domain-containing protein; Unnamed protein product; Some similarities with aminotransferase. Putative transmembrane protein.
 
     0.823
trpA
Tryptophan synthase alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.809
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
  0.800
plu1437
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to 3-(3-hydroxy-phenyl) propionate hydroxylase MphA protein of Escherichia coli.
 
  
 0.709
plu1439
Unnamed protein product; Similar to unknown protein.
 
  
 0.700
plu1436
Unnamed protein product; Hypothetical protein.
       0.658
plu4192
Unnamed protein product; Similar to polyketide cyclase.
  
  
 0.606
plu2093
Unnamed protein product; Similar to unknown protein.
  
  
 0.439
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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