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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1467Unnamed protein product; Some similarities with ABC-type transport proteins. (254 aa)    
Predicted Functional Partners:
plu2741
Unnamed protein product; Similar to ABC transporter, ATP-binding protein and permease.
  
 0.771
plu0554
Unnamed protein product; Similar to ABC transporter, ATP-binding protein.
 
   
 0.770
plu2648
Unnamed protein product; Highly similar to ATP-binding component of ABC transporter.
 
   
 0.760
plu0571
Unnamed protein product; Similar to putative AAA-family ATPase gene.
  
   0.693
plu1215
Unnamed protein product; Similar to ABC transporter, ATP-binding protein and permease (IM-ABC).
  
 0.677
btuD
Vitamin B12 transport ATP-binding protein BtuD (Vitamin B12-transporting ATPase); Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.
  
     0.671
plu2319
Unnamed protein product; Similar to the lipoprotein inner membrane ABC-transporter Irp6 of Yersinia enterocolitica.
  
 0.634
plu2318
Unnamed protein product; Similar to the lipoprotein inner membrane ABC-transporter Irp6 of Yersinia enterocolitica.
  
 0.612
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.563
plu1541
Unnamed protein product; Similar to granaticin polyketide ketoreductase and 3-ketoacyl-acyl carrier protein reductase.
  
 
 0.534
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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