Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pnuCProtein PnuC. (241 aa)    
Predicted Functional Partners:
nadA
Quinolinate synthetase A; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate; Belongs to the quinolinate synthase A family. Type 1 subfamily.
 
  
 0.941
nadR
Transcriptional regulator NadR.
 
   
 0.776
nadB
L-aspartate oxidase (quinolinate synthetase B); Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
  
 0.656
plu2232
UPF0482 protein plu2232; Unnamed protein product; Similar to unknown protein YnfB precursor of Escherichia coli; Belongs to the UPF0482 family.
  
     0.544
plu1818
Unnamed protein product; Similar to unknown protein YceP of Escherichia coli.
  
     0.542
plu3616
UPF0231 protein plu3616; Unnamed protein product; Similar to unknown protein YacL of Escherichia coli; Belongs to the UPF0231 family.
  
     0.536
plu0306
Unnamed protein product; Similar to unknown protein YhjJ precursor of Escherichia coli.
  
     0.488
plu2088
Unnamed protein product; Similar to putative lipoprotein YceB of Escherichia coli.
  
     0.482
thiK
Thiamine kinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
 
   
 0.481
fruA
PTS system, fructose-specific IIBC component.
      
 0.462
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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