ybhF protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ybhF

ABC transporter ATP-binding protein YbhF. (579 aa)

Predicted Functional Partners:

ybhR

0.997

ybhS

0.997

ybhG

0.979

plu1510

0.894

plu4516

0.707

plu4514

0.631

plu4515

0.574

yadH

0.473

rhlE

0.464

dusC

0.445

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dusC	plu1510	plu1512	plu1510	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	0.454
dusC	rhlE	plu1512	plu1511	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.	0.866
dusC	ybhF	plu1512	plu1508	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	ABC transporter ATP-binding protein YbhF.	0.445
dusC	ybhG	plu1512	plu1509	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	Membrane Fusion Protein (MFP) YbhG.	0.445
dusC	ybhR	plu1512	plu1506	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	ABC transporter permease protein YbhR.	0.445
dusC	ybhS	plu1512	plu1507	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	ABC transporter permease protein YbhS.	0.445
plu1510	dusC	plu1510	plu1512	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.	0.454
plu1510	rhlE	plu1510	plu1511	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.	0.454
plu1510	ybhF	plu1510	plu1508	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	ABC transporter ATP-binding protein YbhF.	0.894
plu1510	ybhG	plu1510	plu1509	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	Membrane Fusion Protein (MFP) YbhG.	0.877
plu1510	ybhR	plu1510	plu1506	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	ABC transporter permease protein YbhR.	0.856
plu1510	ybhS	plu1510	plu1507	HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli.	ABC transporter permease protein YbhS.	0.848
plu4514	plu4515	plu4514	plu4515	Unnamed protein product; Similar to permease protein of ABC transport system.	Unnamed protein product; Similar to permease protein of ABC transport system.	0.845
plu4514	plu4516	plu4514	plu4516	Unnamed protein product; Similar to permease protein of ABC transport system.	Unnamed protein product; Highly similar to membrane fusion protein (MFP) of ABC transport system.	0.954
plu4514	ybhF	plu4514	plu1508	Unnamed protein product; Similar to permease protein of ABC transport system.	ABC transporter ATP-binding protein YbhF.	0.631
plu4514	ybhG	plu4514	plu1509	Unnamed protein product; Similar to permease protein of ABC transport system.	Membrane Fusion Protein (MFP) YbhG.	0.582
plu4514	ybhR	plu4514	plu1506	Unnamed protein product; Similar to permease protein of ABC transport system.	ABC transporter permease protein YbhR.	0.558
plu4514	ybhS	plu4514	plu1507	Unnamed protein product; Similar to permease protein of ABC transport system.	ABC transporter permease protein YbhS.	0.589
plu4515	plu4514	plu4515	plu4514	Unnamed protein product; Similar to permease protein of ABC transport system.	Unnamed protein product; Similar to permease protein of ABC transport system.	0.845
plu4515	plu4516	plu4515	plu4516	Unnamed protein product; Similar to permease protein of ABC transport system.	Unnamed protein product; Highly similar to membrane fusion protein (MFP) of ABC transport system.	0.955

page 1 of 4

Server load: medium (42%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About