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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1510HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative transcriptional regulator, TetR family, YbiH of Escherichia coli. (230 aa)    
Predicted Functional Partners:
ybhG
Membrane Fusion Protein (MFP) YbhG.
 
  
 0.868
ybhF
ABC transporter ATP-binding protein YbhF.
 
    0.867
ybhR
ABC transporter permease protein YbhR.
 
  
 0.853
ybhS
ABC transporter permease protein YbhS.
 
  
 0.846
cutF
Copper homeostasis protein CutF precursor.
  
     0.529
plu4770
Unnamed protein product; Similar to putative membrane protein YiiR of Escherichia coli.
  
     0.499
leuO
Activator protein in leuABCD operon; Belongs to the LysR transcriptional regulatory family.
  
 
 
 0.460
rhlE
ATP-dependent RNA helicase RhlE; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
       0.450
dusC
tRNA-dihydrouridine(16) synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily.
       0.450
fepE
Ferric enterobactin transport protein.
  
     0.435
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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