Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1531AB hydrolase-1 domain-containing protein; Unnamed protein product; Some similarities with different peroxydase. (312 aa)    
Predicted Functional Partners:
plu1530
Unnamed protein product; Similar to dihydrodipicolinate synthetase; Belongs to the DapA family.
 
     0.799
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
 0.639
plu1532
Hydrolase_4 domain-containing protein; Unnamed protein product; Some similarities with probable beta-ketoadipate enol-lactone hydrolase and probable chloride peroxidase.
     
 0.622
plu1529
Uncharacterized protein; Truncated gene. Some similarities with putative transposase.
       0.572
hpcG
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
  
 0.411
plu2201
FAA_hydrolase domain-containing protein; Unnamed protein product; Similar to 2-oxopent-4-dienoate hydratase.
  
  
 0.411
plu1322
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to 2.4-dihydroxybenzoate monooxygenase.
 
 
 0.401
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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