Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu1589Unnamed protein product; Similar to putative surface protein YbjE of Escherichia coli. (299 aa)    
Predicted Functional Partners:
plu4110
Probable queuosine precursor transporter; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
  
    0.516
plu1778
FUSC-like domain-containing protein; Unnamed protein product; Similar to probable membrane protein YccS of Escherichia coli.
  
     0.515
plu4553
Unnamed protein product; Similar to unknown protein YtfN of Escherichia coli.
  
     0.481
mukB
Cell division protein; Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division; Belongs to the SMC family. MukB subfamily.
  
     0.442
grxA
Glutaredoxin 1 (Grx1).
 
     0.414
artI
Arginine-binding periplasmic protein 1 precursor; Belongs to the bacterial solute-binding protein 3 family.
       0.405
artP
Arginine transport ATP-binding protein ArtP.
       0.405
artM
Arginine transport system permease protein artM.
       0.401
artQ
Arginine transport system permease protein artQ.
       0.401
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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