Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aat | cydC | plu1596 | plu1597 | Leucyl, phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Transport ATP-binding protein CydC. | 0.793 |
| aat | cydD | plu1596 | plu1598 | Leucyl, phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Transport ATP-binding protein CydD. | 0.792 |
| aat | trxB | plu1596 | plu1599 | Leucyl, phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Thioredoxin reductase (NADPH). | 0.550 |
| afuC | cydC | plu0810 | plu1597 | ABC transporter ATP-binding protein AfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. | Transport ATP-binding protein CydC. | 0.666 |
| cydA | cydB | plu1449 | plu1450 | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | 0.999 |
| cydA | cydC | plu1449 | plu1597 | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | Transport ATP-binding protein CydC. | 0.780 |
| cydA | cydD | plu1449 | plu1598 | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | Transport ATP-binding protein CydD. | 0.897 |
| cydA | plu2042 | plu1449 | plu2042 | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | Unnamed protein product; Similar to quinol oxidase subunit II. | 0.955 |
| cydA | plu2043 | plu1449 | plu2043 | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | Unnamed protein product; Similar to quinol oxidase subunit I. | 0.916 |
| cydB | cydA | plu1450 | plu1449 | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | 0.999 |
| cydB | cydC | plu1450 | plu1597 | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | Transport ATP-binding protein CydC. | 0.852 |
| cydB | cydD | plu1450 | plu1598 | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | Transport ATP-binding protein CydD. | 0.919 |
| cydB | plu2042 | plu1450 | plu2042 | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | Unnamed protein product; Similar to quinol oxidase subunit II. | 0.922 |
| cydB | plu2043 | plu1450 | plu2043 | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | Unnamed protein product; Similar to quinol oxidase subunit I. | 0.963 |
| cydC | aat | plu1597 | plu1596 | Transport ATP-binding protein CydC. | Leucyl, phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.793 |
| cydC | afuC | plu1597 | plu0810 | Transport ATP-binding protein CydC. | ABC transporter ATP-binding protein AfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. | 0.666 |
| cydC | cydA | plu1597 | plu1449 | Transport ATP-binding protein CydC. | Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus. | 0.780 |
| cydC | cydB | plu1597 | plu1450 | Transport ATP-binding protein CydC. | Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II). | 0.852 |
| cydC | cydD | plu1597 | plu1598 | Transport ATP-binding protein CydC. | Transport ATP-binding protein CydD. | 0.998 |
| cydC | metN | plu1597 | plu0697 | Transport ATP-binding protein CydC. | D-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.866 |
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