Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cydCTransport ATP-binding protein CydC. (582 aa)    
Predicted Functional Partners:
cydD
Transport ATP-binding protein CydD.
 
0.999
metN
D-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
    
0.865
cydB
Cytochrome D ubiquinol oxidase subunit II (Cytochrome BD-I oxidase subunit II).
 
  
 0.864
aat
Leucyl, phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
       0.854
plu2042
Unnamed protein product; Similar to quinol oxidase subunit II.
 
  
 0.774
cydA
Cytochrome D ubiquinol oxidase subunit I (Cytochrome BD-I oxidase subunit I); Truncated gene. Some similarities with unknown protein of Photorhabdus.
 
  
 0.772
afuC
ABC transporter ATP-binding protein AfuC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
   
0.669
plu4486
Unnamed protein product; Similar to amino acid ABC transporter (ATP-binding protein).
 
    
0.666
plu2043
Unnamed protein product; Similar to quinol oxidase subunit I.
 
  
 0.662
trxB
Thioredoxin reductase (NADPH).
     
 0.581
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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