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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1615Unnamed protein product; Similar to unknown protein YcaO of Escherichia coli. (590 aa)    
Predicted Functional Partners:
plu2552
Unnamed protein product; Similar to putative nitroreductase YdjA of Escherichia coli.
  
  
 0.755
plu1472
Unnamed protein product; Similar to putative membrane protein.
  
  
 0.743
ansB
L-asparaginase II precursor (L-asparagine amidohydrolase II) (L-asnase II) (colaspase); Belongs to the asparaginase 1 family.
       0.558
yadH
ABC transporter, integral membrane protein YadH.
  
  
 0.453
ybhR
ABC transporter permease protein YbhR.
  
  
 0.453
ybhS
ABC transporter permease protein YbhS.
  
  
 0.453
plu4514
Unnamed protein product; Similar to permease protein of ABC transport system.
  
  
 0.453
plu4515
Unnamed protein product; Similar to permease protein of ABC transport system.
  
  
 0.453
focA
Formate transporter 1 FocA (Formate channel 1).
     
 0.448
thiI
tRNA sulfurtransferase; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
  
  
 0.439
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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