Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1618N-acetyltransferase domain-containing protein; Unnamed protein product; Similar to putative acetyltransferase. (167 aa)    
Predicted Functional Partners:
plu1617
Unnamed protein product; Similar to unknown protein.
 
 
   0.962
plu2651
Unnamed protein product; Some similarities with unknown protein.
 
 
   0.827
plu3889
Unnamed protein product; Highly similar to unknown protein.
 
 
   0.826
plu0180
Unnamed protein product; Similar to unknown protein of Escherichia coli O157:H7.
  
 
 
 0.804
plu0959
Unnamed protein product; Similar to unknown protein.
 
 
   0.804
plu0861
Unnamed protein product; Similar to unknown protein.
  
 
 
 0.802
serC
3-phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
     
 0.473
ansB
L-asparaginase II precursor (L-asparagine amidohydrolase II) (L-asnase II) (colaspase); Belongs to the asparaginase 1 family.
       0.470
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
     
 0.414
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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