Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1628Fe2OG dioxygenase domain-containing protein; Unnamed protein product; Similar to unknown protein. (270 aa)    
Predicted Functional Partners:
plu1627
Unnamed protein product; Similar to putative integral membrane protein.
       0.779
tcdA4
Insecticidal toxin complex protein TcdA4.
  
     0.661
tcdA2
Insecticidal toxin complex protein TcdA2.
  
     0.654
tcdA1
Highly similar to insecticidal toxin complex protein TcdA (toxin A).
  
     0.653
plu1652
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.642
tcdA5
Insecticidal toxin complex protein TcdA5.
  
     0.638
plu1692
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.633
plu1715
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.620
plu2399
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.617
plu2516
Unnamed protein product; Highly similar to unknown protein of Photorhabdus.
  
     0.615
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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