Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1667Unnamed protein product; Similar to unknown protein. (149 aa)    
Predicted Functional Partners:
plu1665
Unnamed protein product; Similar to unknown protein.
 
   0.925
plu1666
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with phage-related contractile tail sheath protein.
 
   0.925
plu1663
Unnamed protein product; Similar to unknown protein.
 
   0.915
plu1659
GPW_gp25 domain-containing protein; Unnamed protein product; Similar to base plate protein gp25 of Bacteriophage.
 
   0.906
plu1661
Unnamed protein product; Similar to unknown protein.
 
   0.904
plu1664
Phage_sheath_1C domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
   0.903
plu1660
Unnamed protein product; Similar to unknown protein and some similarities with VgrG protein.
 
    0.898
plu1657
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
 
 
   0.885
plu1656
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
 
 
   0.868
plu1654
Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown protein.
 
     0.830
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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