Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aspCAspartate aminotransferase (transaminase A). (396 aa)    
Predicted Functional Partners:
pepN
Aminopeptidase N.
   
 0.946
gdhA
NADP-specific glutamate dehydrogenase (NADP-GDH); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.940
pheA
P-protein [includes: chorismate mutase (CM); prephenate dehydratase (PDT)].
    
 0.937
tyrA
T-protein [includes: chorismate mutase (CM); prephenate dehydrogenase (PDH)].
    
 0.936
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 0.934
plu3091
Aminotran_1_2 domain-containing protein; Unnamed protein product; Highly similar to probable aminotransferase YfbQ of Escherichia coli.
   
 0.927
plu1443
Aminotran_1_2 domain-containing protein; Unnamed protein product; Similar to histidinol-phosphate aminotransferase.
   
 
 0.924
argA
Amino-acid acetyltransferase (N-acetylglutamate synthase); Belongs to the acetyltransferase family. ArgA subfamily.
     
 0.913
plu2770
Glutamine amidotransferase type-2 domain-containing protein; Unnamed protein product; Similar to asparagine synthetase B AsnB of Escherichia coli.
   
 0.913
asnA
Aspartate--ammonia ligase (Asparagine synthetase A).
     
 0.911
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.