Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1802Unnamed protein product; Similar to oxidoreductase. (377 aa)    
Predicted Functional Partners:
plu1800
AP_endonuc_2 domain-containing protein; Unnamed protein product; Similar to myo-inositol catabolism IolE of Bacillus subtilis and to rhizopine catabolism protein.
 
 0.982
plu1801
Unnamed protein product; Similar to myo-inositol catabolism protein IolC of Bacillus subtilis.
  
 0.930
plu1799
Unnamed protein product; Similar to myo-inositol catabolism iolB of Bacillus subtilis.
 
  
 0.908
plu1805
Unnamed protein product; Similar to myo-inositol catabolism IolD of Bacillus subtilis; Belongs to the TPP enzyme family.
 
  
 0.811
plu1807
Unnamed protein product; Similar to unknown protein and to probable transcriptional regulator.
 
     0.570
plu0727
AP_endonuc_2 domain-containing protein; Unnamed protein product; Some similarities with D-tagatose 3-epimerase-related protein.
 
  
 0.536
lysS
Lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.535
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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