Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu1810HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator. (235 aa)    
Predicted Functional Partners:
rob
Right origin-binding protein.
 
 
 0.785
plu2787
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC-family transcriptional regulatory protein.
  
   0.773
plu2638
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcriptional regulator (AraC/XylS family).
  
   0.765
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
   
 0.741
plu1330
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to AraC-family transcriptional regulator.
 
 
 0.680
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
  
 0.662
plu1809
tRNA-binding domain-containing protein; Unnamed protein product; Similar to protein secretion chaperonin CsaA of Bacillus subtilis and to putative tRNA synthetase YgjH of Escherichia coli.
       0.605
plu2315
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Some similarities in the C-terminal part with transcription regulators.
  
   0.603
plu1811
Unnamed protein product; Similar to unknown protein.
       0.598
plu1812
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.
       0.598
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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