STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu1811Unnamed protein product; Similar to unknown protein. (95 aa)    
Predicted Functional Partners:
plu1812
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli.
 
 
 
 0.966
plu2984
HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with virulence associated protein A (VapA) and YbaQ protein of Escherichia coli.
 
 
 
 0.859
plu3003
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.
 
 
 
 0.842
plu4788
HTH cro/C1-type domain-containing protein; Truncated gene. Similar to the C-terminal region of proteic killer suppression protein HigA.
 
 
 
 0.841
plu2085
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.
 
 
 
 0.840
plu0865
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to virulence-associated protein and proteic killer active protein.
 
 
 
 0.839
plu1810
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator.
       0.598
plu1809
tRNA-binding domain-containing protein; Unnamed protein product; Similar to protein secretion chaperonin CsaA of Bacillus subtilis and to putative tRNA synthetase YgjH of Escherichia coli.
       0.471
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.