Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu1812HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YbaQ of Escherichia coli. (108 aa)    
Predicted Functional Partners:
plu1811
Unnamed protein product; Similar to unknown protein.
 
 
 
 0.972
plu2085
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein YddM of Escherichia coli.
  
     0.774
plu4788
HTH cro/C1-type domain-containing protein; Truncated gene. Similar to the C-terminal region of proteic killer suppression protein HigA.
  
     0.774
plu3002
Unnamed protein product; Similar to proteic killer suppression protein HigA from plasmid Rts1.
 
 
 
 0.710
plu0866
Unnamed protein product; Highly similar to proteic killer suppression protein.
 
 
 
 0.668
plu1810
HTH araC/xylS-type domain-containing protein; Unnamed protein product; Similar to transcription regulator.
       0.598
plu1809
tRNA-binding domain-containing protein; Unnamed protein product; Similar to protein secretion chaperonin CsaA of Bacillus subtilis and to putative tRNA synthetase YgjH of Escherichia coli.
       0.471
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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