Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
plu1866Bac_luciferase domain-containing protein; Unnamed protein product; Highly similar to nitrilotriacetate monooxygenase component A. (443 aa)    
Predicted Functional Partners:
hpaC
4-hydroxyphenylacetic acid hydroxylase.
 
  
 0.632
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
     
 0.594
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
     
 0.554
plu4298
HD_domain domain-containing protein; Unnamed protein product; Similar to unknown protein and some similarities with cyanamide hydratase.
  
     0.526
plu1322
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to 2.4-dihydroxybenzoate monooxygenase.
  
     0.519
luxA
Alkanal monooxygenase alpha chain (Bacterial luciferase alpha chain); Light-emitting reaction in luminous bacteria.
  
     0.496
plu2236
FAD_binding_3 domain-containing protein; Unnamed protein product; Some similarities with probable monooxygenase.
  
     0.486
plu1743
FAD_binding_3 domain-containing protein; Unnamed protein product; Similar to putative monooxygenase.
  
     0.477
plu2512
Epimerase domain-containing protein; Unnamed protein product; Similar to unknown protein and to probable UDP glucose 4-epimerase.
  
     0.468
plu1865
Unnamed protein product; Truncated gene. Some similarities with putative phosphoenolpyruvate phosphomutase.
       0.454
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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