Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
plu1878Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase. (1065 aa)    
Predicted Functional Partners:
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
0.999
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
 
0.996
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
 
 0.995
plu2642
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
0.987
plu1885
PKS_KS domain-containing protein; Unnamed protein product; Similar to polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.984
plu3919
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase and peptide synthetase.
  
 0.980
plu2320
Unnamed protein product; Similar to HMWP2 protein of Yersinia enterocolitica.
 
 
0.978
plu1218
ATP-grasp domain-containing protein; Unnamed protein product; Some similarities with putative ligase/carboxylase.
 
 
 0.977
plu1217
PKS_TE domain-containing protein; Unnamed protein product; Some similarities with thioesterase II, pyochelin biosynthetic protein PchC and gramicidin S biosynthesis protein GrsT.
 
  
 0.974
plu2323
PKS_TE domain-containing protein; Unnamed protein product; Similar to Irp4 protein of Yersinia enterocolitica.
 
  
 0.973
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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