Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
plu1885PKS_KS domain-containing protein; Unnamed protein product; Similar to polyketide synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (616 aa)    
Predicted Functional Partners:
fabD
Malonyl CoA-acyl carrier protein transacylase (MCT).
 
 0.995
plu1878
Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase.
  
 0.984
plu2642
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
 0.984
plu3533
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotics biosynthesis (NosC, gramidin S synthetase II, tyrocidine synthetase III...); Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.976
plu0897
Carrier domain-containing protein; Unnamed protein product; Similar to peptide synthetases, pyoverdine synthetase and antibiotics synthetases; Belongs to the ATP-dependent AMP-binding enzyme family.
 
    0.974
plu1211
Carrier domain-containing protein; Unnamed protein product; Some similarities with lichenysin synthetase B, tyrocidine synthetase III, bacitracin synthetases and to other proteins involved in antibiotic synthesis.
 
    0.972
dltA
D-alanine-activating enzyme (DAE) (D-alanine-D-alanyl carrier protein ligase) (DCL).
 
    0.949
plu3919
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase and peptide synthetase.
   
 0.936
plu0756
AMP-binding domain-containing protein; Unnamed protein product; Similar to enterobactin synthetase component F-related protein and other antibiotics synthetases.
  0.934
plu1220
Carrier domain-containing protein; Unnamed protein product; Some similarities with different peptide-synthetase and surfactin synthetase. Putative transmembrane protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
    0.934
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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